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1

Variable Selection for Clustering with Gaussian Mixture Models

Cathy Maugis, Gilles Celeux, Marie-Laure Martin-Magniette

Journal:

Year:

2009

Language:

english

File:

PDF, 245 KB

english, 2009

2

Hidden Markov Models with mixtures as emission distributions

Stevenn Volant, Caroline Bérard, Marie-Laure Martin-Magniette…

Journal:

Statistics and Computing

Year:

2014

Language:

english

File:

PDF, 1.86 MB

english, 2014

3

Mutations in the Arabidopsis Homolog of LST8/GβL, a Partner of the Target of Rapamycin Kinase, Impair Plant Growth, Flowering, and Metabolic Adaptation to Long Days

Manon Moreau, Marianne Azzopardi, Gilles Clément, Thomas Dobrenel, Chloé Marchive, Charlotte Renne, Marie-Laure Martin-Magniette, Ludivine Taconnat, Jean-Pierre Renou, Christophe Robaglia and Christia

Journal:

Year:

2012

Language:

english

File:

PDF, 3.70 MB

english, 2012

4

Genetic variability of the phloem sap metabolite content of maize (Zea mays L.) during the kernel-filling period

Yesbergenova-Cuny, Zhazira, Dinant, Sylvie, Martin-Magniette, Marie-Laure, Quilleré, Isabelle, Armengaud, Patrick, Monfalet, Priscilla, Lea, Peter J., Hirel, Bertrand

Journal:

Year:

2016

Language:

english

File:

PDF, 2.09 MB

english, 2016

5

Combining laser-assisted microdissection (LAM) and RNA-seq allows to perform a comprehensive transcriptomic analysis of epidermal cells of Arabidopsis embryo

Sakai, Kaori, Taconnat, Ludivine, Borrega, Nero, Yansouni, Jennifer, Brunaud, Véronique, Paysant-Le Roux, Christine, Delannoy, Etienne, Martin Magniette, Marie-Laure, Lepiniec, Loïc, Faure, Jean Denis

Journal:

Year:

2018

Language:

english

File:

PDF, 1.47 MB

english, 2018

6

Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

Patricia Faivre Rampant, Isabelle Lesur, Clément Boussardon, Frédérique Bitton, Marie-Laure Martin-Magniette, Catherine Bodénès, Grégoire Le Provost, Hélène Bergès, Sylvia Fluch, Antoine Kremer, Chris

Journal:

Year:

2011

Language:

english

File:

PDF, 1.90 MB

english, 2011

7

Genome-wide expression profiling of the host response to root-knot nematode infection in Arabidopsis

Fabien Jammes, Philippe Lecomte, Janice de Almeida-Engler, Frédérique Bitton, Marie-Laure Martin-Magniette, Jean Pierre Renou, Pierre Abad, Bruno Favery

Journal:

The Plant Journal

Year:

2005

Language:

english

File:

PDF, 1.00 MB

english, 2005

8

Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5

Moussa Benhamed, Marie-Laure Martin-Magniette, Ludivine Taconnat, Frédérique Bitton, Caroline Servet, Rebecca De Clercq, Björn De Meyer, Caroline Buysschaert, Stéphane Rombauts, Raimundo Villarroel, S

Journal:

The Plant Journal

Year:

2008

Language:

english

File:

PDF, 732 KB

english, 2008

9

Identification of germinal disk region derived genes potentially involved in hen fertility

Sebastien Elis, Elisabeth Blesbois, Isabelle Couty, Sandrine Balzergue, Marie-Laure Martin-Magniette, Florence Batellier, Marina S. Govoroun

Journal:

Molecular Reproduction and Development

Year:

2009

Language:

english

File:

PDF, 288 KB

english, 2009

10

Variational Bayes approach for model aggregation in unsupervised classification with Markovian dependency

Stevenn Volant, Marie-Laure Martin Magniette, Stéphane Robin

Journal:

Computational Statistics & Data Analysis

Year:

2012

Language:

english

File:

PDF, 990 KB

english, 2012

11

Normalization for triple-target microarray experiments

Marie-Laure Martin-Magniette, Julie Aubert, Avner Bar-Hen, Samira Elftieh, Frederic Magniette, Jean-Pierre Renou, Jean-Jacques Daudin

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 335 KB

english, 2008

12

Brain transcriptional stability upon prion protein-encoding gene invalidation in zygotic or adult mouse

Sead Chadi, Rachel Young, Sandrine Le Guillou, Gaëlle Tilly, Frédérique Bitton, Marie-Laure Martin-Magniette, Ludivine Soubigou-Taconnat, Sandrine Balzergue, Marthe Vilotte, Coralie Peyre, Bruno Passe

Journal:

Year:

2010

Language:

english

File:

PDF, 808 KB

english, 2010

13

Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

David Cohen, Marie-Béatrice Bogeat-Triboulot, Emilie Tisserant, Sandrine Balzergue, Marie-Laure Martin-Magniette, Gaëlle Lelandais, Nathalie Ningre, Jean-Pierre Renou, Jean-Philippe Tamby, Didier Le T

Journal:

Year:

2010

Language:

english

File:

PDF, 1.92 MB

english, 2010

14

Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome

Sébastien Aubourg, Marie-Laure Martin-Magniette, Véronique Brunaud, Ludivine Taconnat, Frédérique Bitton, Sandrine Balzergue, Pauline E Jullien, Mathieu Ingouff, Vincent Thareau, Thomas Schiex, Alain

Journal:

Year:

2007

Language:

english

File:

PDF, 2.97 MB

english, 2007

15

Genome-wide interacting effects of sucrose and herbicide-mediated stress inArabidopsis thaliana: novel insights into atrazine toxicity and sucrose-induced tolerance

Fanny Ramel, Cécile Sulmon, Francisco Cabello-Hurtado, Ludivine Taconnat, Marie-Laure Martin-Magniette, Jean-Pierre Renou, Abdelhak El Amrani, Ivan Couée, Gwenola Gouesbet

Journal:

Year:

2007

Language:

english

File:

PDF, 1.20 MB

english, 2007

16

Search for the genes involved in oocyte maturation and early embryo development in the hen

Sebastien Elis, Florence Batellier, Isabelle Couty, Sandrine Balzergue, Marie-Laure Martin-Magniette, Philippe Monget, Elisabeth Blesbois, Marina S Govoroun

Journal:

Year:

2008

Language:

english

File:

PDF, 721 KB

english, 2008

17

Expression variation in connected recombinant populations ofArabidopsis thalianahighlights distinct transcriptome architectures

Cubillos, Francisco A, Yansouni, Jennifer, Khalili, Hamid, Balzergue, Sandrine, Elftieh, Samira, Martin-Magniette, Marie-Laure, Serrand, Yann, Lepiniec, Loic, Baud, Sebastien, Dubreucq, Bertrand, Reno

Journal:

Year:

2012

Language:

english

File:

PDF, 652 KB

english, 2012

18

Unsupervised Classification for Tiling Arrays: ChIP-chip and Transcriptome

Bérard, Caroline, Martin-Magniette, Marie-Laure, Brunaud, Véronique, Aubourg, Sébastien, Robin, Stéphane

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2011

Language:

english

File:

PDF, 914 KB

english, 2011

19

Widespread anti-sense transcription in apple is correlated with siRNA production and indicates a large potential for transcriptional and/or post-transcriptional control

Celton, Jean-Marc, Gaillard, Sylvain, Bruneau, Maryline, Pelletier, Sandra, Aubourg, Sébastien, Martin-Magniette, Marie-Laure, Navarro, Lionel, Laurens, François, Renou, Jean-Pierre

Journal:

New Phytologist

Year:

2014

Language:

english

File:

PDF, 1.84 MB

english, 2014

20

Salmonella enterica Flagellin Is Recognized via FLS2 and Activates PAMP-Triggered Immunity in Arabidopsis thaliana

Garcia, Ana Victoria, Charrier, Amélie, Schikora, Adam, Bigeard, Jean, Pateyron, Stephanie, de Tauzia-Moreau, Marie-Ludivine, Evrard, Alexandre, Mithöfer, Axel, Martin-Magniette, Marie Laure, Virlogeu

Journal:

Molecular Plant

Year:

2014

Language:

english

File:

PDF, 3.79 MB

english, 2014

21

Estimation of the hazard function in a semiparametric model with covariate measurement error

Martin-Magniette, Marie-Laure, Taupin, Marie-Luce

Journal:

ESAIM Probability and Statistics

Year:

2009

Language:

english

File:

PDF, 439 KB

english, 2009

22

Arabidopsis TFL2/LHP1 Specifically Associates with Genes Marked by Trimethylation of Histone H3 Lysine 27

Turck, Franziska, Roudier, François, Farrona, Sara, Martin-Magniette, Marie-Laure, Guillaume, Elodie, Buisine, Nicolas, Gagnot, Séverine, Martienssen, Robert A., Coupland, George, Colot, Vincent

Journal:

Year:

2007

Language:

english

File:

PDF, 728 KB

english, 2007

23

On the estimation of mixtures of Poisson regression models with large number of components

Papastamoulis, Panagiotis, Martin-Magniette, Marie-Laure, Maugis-Rabusseau, Cathy

Journal:

Computational Statistics & Data Analysis

Year:

2016

Language:

english

File:

PDF, 1.78 MB

english, 2016

24

Systemic Signaling of the Plant Nitrogen Status Triggers Specific Transcriptome Responses Depending on the Nitrogen Source in Medicago truncatula

Sandrine Ruffel, Sandra Freixes, Sandrine Balzergue, Pascal Tillard, Christian Jeudy, Marie Laure Martin-Magniette, Margaretha J. van der Merwe, Klementina Kakar, Jerôme Gouzy, Alisdair R. Fernie, Mic

Journal:

PLANT PHYSIOLOGY

Year:

2008

Language:

english

File:

PDF, 2.69 MB

english, 2008

25

A Light-Regulated Genetic Module Was Recruited to Carpel Development in Arabidopsis following a Structural Change to SPATULA

Mathieu C. Reymond, Géraldine Brunoud, Aurélie Chauvet, Jaime F. Martínez-Garcia, Marie-Laure Martin-Magniette, Françoise Monéger and Charles P. Scutt

Journal:

Year:

2012

Language:

english

File:

PDF, 2.72 MB

english, 2012

26

Transcriptional and Metabolic Adjustments in ADP-Glucose Pyrophosphorylase-Deficient bt2 Maize Kernels

Magalie Cossegal, Pierre Chambrier, Sylvie Mbelo, Sandrine Balzergue, Marie-Laure Martin-Magniette, Annick Moing, Catherine Deborde, Virginie Guyon, Pascual Perez and Peter Rogowsky

Journal:

PLANT PHYSIOLOGY

Year:

2008

Language:

english

File:

PDF, 4.29 MB

english, 2008

27

Cytonuclear interactions affect adaptive traits of the annual plant Arabidopsis thaliana in the field

Roux, Fabrice, Mary-Huard, Tristan, Barillot, Elise, Wenes, Estelle, Botran, Lucy, Durand, Stéphanie, Villoutreix, Romain, Martin-Magniette, Marie-Laure, Camilleri, Christine, Budar, Françoise

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.09 MB

english, 2016

28

Variable Selection for Clustering with Gaussian Mixture Models

Cathy Maugis, Gilles Celeux and Marie-Laure Martin-Magniette

Journal:

Year:

2009

Language:

english

File:

PDF, 1.50 MB

english, 2009

29

Altered DNA methylation associated with an abnormal liver phenotype in a cattle model with a high incidence of perinatal pathologies

Kiefer, Hélène, Jouneau, Luc, Campion, Évelyne, Rousseau-Ralliard, Delphine, Larcher, Thibaut, Martin-Magniette, Marie-Laure, Balzergue, Sandrine, Ledevin, Mireille, Prézelin, Audrey, Chavatte-Palmer,

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 2.45 MB

english, 2016

30

Transcriptome reprogramming due to the introduction of a barley telosome into bread wheat affects more barley genes than wheat

Rey, Elodie, Abrouk, Michael, Keeble-Gagnère, Gabriel, Karafiátová, Miroslava, Vrána, Jan, Balzergue, Sandrine, Soubigou-Taconnat, Ludivine, Brunaud, Véronique, Martin-Magniette, Marie-Laure, Endo, Ta

Journal:

Plant Biotechnology Journal

Year:

2018

Language:

english

File:

PDF, 4.31 MB

english, 2018

31

Corrigendum to “Genetic variability of the phloem sap metabolite content of maize ( Zea mays L.) during the kernel-filling period” [Plant Sci. 252 (2016) 347–357]

Yesbergenova-Cuny, Zhazira, Dinant, Sylvie, Martin-Magniette, Marie-Laure, Quilleré, Isabelle, Armengaud, Patrick, Monfalet, Priscilla, Lea, Peter J., Hirel, Bertrand

Journal:

Year:

2018

Language:

english

File:

PDF, 133 KB

english, 2018

32

Transcriptome analysis in Hevea brasiliensis latex revealed changes in hormone signalling pathways during ethephon stimulation and consequent Tapping Panel Dryness

Montoro, Pascal, Wu, Shuangyang, Favreau, Bénédicte, Herlinawati, Eva, Labrune, Cécile, Martin-Magniette, Marie-Laure, Pointet, Stéphanie, Rio, Maryannick, Leclercq, Julie, Ismawanto, Sigit, Kuswanhad

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 3.14 MB

english, 2018

33

A Gene-Phenotype Network Based on Genetic Variability for Drought Responses Reveals Key Physiological Processes in Controlled and Natural Environments

Rengel, David, Arribat, Sandrine, Maury, Pierre, Martin-Magniette, Marie-Laure, Hourlier, Thibaut, Laporte, Marion, Varès, Didier, Carrère, Sébastien, Grieu, Philippe, Balzergue, Sandrine, Gouzy, Jérô

Journal:

Year:

2012

Language:

english

File:

PDF, 810 KB

english, 2012

34

Nitrogen Limitation Alters the Response of Specific Genes to Biotic Stress

Farjad, Mahsa, Rigault, Martine, Pateyron, Stéphanie, Martin-Magniette, Marie-Laure, Krapp, Anne, Meyer, Christian, Fagard, Mathilde

Journal:

International Journal of Molecular Sciences

Year:

2018

Language:

english

File:

PDF, 2.56 MB

english, 2018

35

In situ transcriptomic and metabolomic study of the loss of photosynthesis in the leaves of mixotrophic plants exploiting fungi

Lallemand, Félix, Martin-Magniette, Marie-Laure, Gilard, Françoise, Gakière, Bertrand, Launay-Avon, Alexandra, Delannoy, Étienne, Selosse, Marc-André

Journal:

The Plant Journal

Year:

2019

File:

PDF, 4.83 MB

2019

36

Novel Cytonuclear Combinations Modify Arabidopsis thaliana Seed Physiology and Vigor

Boussardon, Clément, Martin-Magniette, Marie-Laure, Godin, Béatrice, Benamar, Abdelilah, Vittrant, Benjamin, Citerne, Sylvie, Mary-Huard, Tristan, Macherel, David, Rajjou, Loïc, Budar, Françoise

Journal:

Frontiers in Plant Science

Year:

2019

Language:

english

File:

PDF, 2.49 MB

english, 2019

37

In situ transcriptomic and metabolomic study of the loss of photosynthesis in the leaves of mixotrophic plants exploiting fungi

Lallemand, Félix, Martin-Magniette, Marie-Laure, Gilard, Françoise, Gakière, Bertrand, Launay-Avon, Alexandra, Delannoy, Étienne, Selosse, Marc-André

Journal:

The Plant Journal

Year:

2019

Language:

english

File:

PDF, 4.83 MB

english, 2019

38

Sampling uncertainty versus method uncertainty: A general framework with applications to omics biomarker selection

Klau, Simon, Martin‐Magniette, Marie‐Laure, Boulesteix, Anne‐Laure, Hoffmann, Sabine

Journal:

Biometrical Journal

Year:

2019

Language:

english

File:

PDF, 801 KB

english, 2019

39

Omics Data Reveal Putative Regulators of Einkorn Grain Protein Composition under Sulphur deficiency

Bonnot, Titouan, Martre, Pierre, Hatte, Victor, Dardevet, Mireille, Leroy, Philippe, BÃ©nard, Camille, Falagan, Natalia, Martin-Magniette, Marie-Laure, Deborde, Catherine, Moing, Annick, Gibon, Yves,

Journal:

PLANT PHYSIOLOGY

Year:

2020

File:

PDF, 3.61 MB

2020

40

Responses of mature symbiotic nodules to the whole plant systemic nitrogen signaling

Lambert, Ilana, Pervent, Marjorie, QuerÃ©, Antoine Le, ClÃ©ment, Gilles, Tauzin, Marc, Severac, Dany, Benezech, Claire, Tillard, Pascal, Martin-Magniette, Marie-Laure, Colella, Stefano, Lepetit, Marc

Journal:

Journal of Experimental Botany

Year:

2020

File:

PDF, 1.97 MB

2020

41

DiCoExpress: a tool to process multifactorial RNAseq experiments from quality controls to co-expression analysis through differential analysis based on contrasts inside GLM models

Lambert, Ilana, Paysant-Le Roux, Christine, Colella, Stefano, Martin-Magniette, Marie-Laure

Journal:

Year:

2020

File:

PDF, 1.48 MB

2020

42

Immediate targets of ETTIN suggest a key role for pectin methylesterase inhibitors in the control of Arabidopsis gynecium development

Andres-Robin, AmÃ©lie, Reymond, Mathieu C., Brunoud, GÃ©raldine, Martin-Magniette, Marie-Laure, MonÃ©ger, FranÃ§oise, Scutt, Charles P.

Journal:

Plant Signaling & Behavior

Year:

2020

File:

PDF, 1.77 MB

2020

43

Identification of a Transcriptomic Prognostic Signature by Machine Learning Using a Combination of Small Cohorts of Prostate Cancer

Vittrant, Benjamin, Leclercq, Mickael, Martin-Magniette, Marie-Laure, Collins, Colin, Bergeron, Alain, Fradet, Yves, Droit, Arnaud

Journal:

Frontiers in Genetics

Year:

2020

File:

PDF, 2.89 MB

2020

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